PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G18710.1
Common NameLOC102700316
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29777.6 Da    PI: 7.3445
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G18710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.4e-28959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss
  OB03G18710.1  9 KRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 59
                  79***********************************************96 PP

2K-box951.2e-31771716100
         K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   ++++++ ++e  +qe+ kLk ++e Lq++qR++lGedL++Ls+keL+qLe+q+e slk+iR +Kn+ ll+q+ +l+ ke++lq+ nk+Lrkkl+e
  OB03G18710.1  77 SQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRLRKNQALLDQLFDLKTKEQQLQDLNKDLRKKLQE 171
                   4456777888999*******************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.52161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32291IPR002100Transcription factor, MADS-box
CDDcd002651.18E-43279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014868.6E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.46185175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS  60
SCMYKTLERY RSCNYNSQDA AAPENEINYQ EYLKLKTRVE FLQTTQRNIL GEDLGPLSMK  120
ELEQLENQIE VSLKQIRLRK NQALLDQLFD LKTKEQQLQD LNKDLRKKLQ ETSAENVLHM  180
SSWQDGGGHS GSATVLAADQ PHHHQGLLHP HPDQGDHSLQ IGYHHPHPHH HQAYMDHLNN  240
EAADMIAHHP NEHIPSGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-24741697101Developmental protein SEPALLATA 3
4ox0_B3e-24741697101Developmental protein SEPALLATA 3
4ox0_C3e-24741697101Developmental protein SEPALLATA 3
4ox0_D3e-24741697101Developmental protein SEPALLATA 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0697280.0AK069728.1 Oryza sativa Japonica Group cDNA clone:J023029M13, full insert sequence.
GenBankAK2890800.0AK289080.1 Oryza sativa Japonica Group cDNA, clone: J090095D11, full insert sequence.
GenBankFJ7509370.0FJ750937.1 Oryza sativa clone KCS115H08 MADS-box transcription factor 1 mRNA, complete cds.
GenBankRICMADS1TF0.0L34271.1 Oryza sativa box protein (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649636.10.0PREDICTED: MADS-box transcription factor 1
SwissprotA2XDY11e-180MADS1_ORYSI; MADS-box transcription factor 1
SwissprotQ10PZ91e-180MADS1_ORYSJ; MADS-box transcription factor 1
TrEMBLJ3LLE50.0J3LLE5_ORYBR; Uncharacterized protein
STRINGOB03G18710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.13e-74MIKC_MADS family protein